SRX028582
GSM607482: ZNF274 K562 ChIP-seq rep2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ZNF274

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
chronic myeloid leukemia cell line
cell line
K562
harvest date
2009-08-20
chip antibody
abnova mouse polyclonal anti-ZNF274
vendor
Abnova

Sequenced DNA Library

library_name
GSM607482: ZNF274_K562_ChIP-seq_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
45815467
Reads aligned (%)
31.4
Duplicates removed (%)
2.1
Number of peaks
555 (qval < 1E-05)

hg19

Number of total reads
45815467
Reads aligned (%)
30.9
Duplicates removed (%)
4.0
Number of peaks
703 (qval < 1E-05)

Base call quality data from DBCLS SRA